OrthoFinder: Highly accurate orthologous sequence groups made easy.
TransRate: Reference free quality assesment of de novo assembled transcriptomes.
MergeAlign: Building better multiple sequence alignments.
DendroBLAST: a webserver for accurate phylogenetic inference in the absence of multiple sequence alignments.
SLaP mapper: a webserver for identifying and quantifying spliced-leader addition and poly-adenylation sites in kinetoplastid genomes.
Conditional Orthology Assignment: a webserver for identifying homologous transcripts from a whole de novo transcriptome assembly.